Christian P. Robert

  1. Discussion of "Is Bayes Posterior just Quick and Dirty Confidence?" by D. A. S. Fraser.

    Authors: Christian P. Robert
    Subjects: Methodology
    Abstract

    Discussion of "Is Bayes Posterior just Quick and Dirty Confidence?" by D. A.
    S. Fraser [arXiv:1112.5582].

  2. Some discussions of D. Fearnhead and D. Prangle's Read Paper "Constructing summary statistics for approximate Bayesian computation: semi-automatic approximate Bayesian computation".

    Authors: Arnaud Doucet, Sumeetpal S. Singh, Christian P. Robert, Nicolas Chopin, Jean-Michel Marin, Julien Cornebise, Ioannis Kosmidis, Christophe Andrieu, Pierre Pudlo, Ajay Jasra, Anthony Lee, Simon Barthelme, Mark Girolami, Mohammed Sedki.
    Subjects: Methodology
    Abstract

    This report is a collection of comments on the Read Paper of Fearnhead and
    Prangle (2011), to appear in the Journal of the Royal Statistical Society
    Series B, along with a reply from the authors.

  3. First moments of the truncated and absolute Student's variates.

    Authors: Christian P. Robert
    Subjects: Statistics
    Abstract

    While some of the enclosed already is a well-known derivation, and the
    remaining may have been obtained in earlier publications, this note computes
    the first two moments of a Student's variate truncated at zero and of an
    absolute (or folded) Student's variate.

  4. Error and Inference: an outsider stand on a frequentist philosophy.

    Authors: Christian P. Robert
    Subjects: Methodology
    Abstract

    This note is an extended review of the book Error and Inference, edited by
    Deborah Mayo and Aris Spanos, about their frequentist and philosophical
    perspective on testing of hypothesis and on the criticisms of alternatives like
    the Bayesian approach.

  5. Inherent Difficulties of Non-Bayesian Likelihood-based Inference, as Revealed by an Examination of a Recent Book by Aitkin.

    Authors: Judith Rousseau, Christian P. Robert, Andrew Gelman
    Subjects: Methodology
    Abstract

    For many decades, statisticians have made attempts to prepare the Bayesian
    omelette without breaking the Bayesian eggs; that is, to obtain probabilistic
    likelihood-based inferences without relying on informative prior distributions.
    A recent example is Murray Aitkin's recent book, {\em Statistical Inference},
    which presents an approach to statistical hypothesis testing based on
    comparisons of posterior distributions of likelihoods under competing models.
    Aitkin develops and illustrates his method using some simple examples of
    inference from iid data and two-way tests of independence.

  6. "Not only defended but also applied": The perceived absurdity of Bayesian inference.

    Authors: Christian P. Robert, Andrew Gelman
    Subjects: Statistics
    Abstract

    The missionary zeal of many Bayesians has been matched, in the other
    direction, by a view among some theoreticians that Bayesian methods are
    absurd-not merely misguided but obviously wrong in principle. We consider
    several examples, beginning with Feller's classic text on probability theory
    and continuing with more recent cases such as the perceived Bayesian nature of
    the so-called doomsday argument.

  7. Lack of confidence in ABC model choice.

    Authors: Christian P. Robert, Jean-Michel Marin, Jean-Marie Cornuet, Natesh Pillai
    Subjects: Methodology
    Abstract

    Approximate Bayesian computation (ABC) have become a essential tool for the
    analysis of complex stochastic models. Earlier, Grelaud et al. (2009) advocated
    the use of ABC for Bayesian model choice in the specific case of Gibbs random
    fields, relying on a inter-model sufficiency property to show that the
    approximation was legitimate.

  8. Approximate Bayesian Computational methods.

    Authors: Christian P. Robert, Jean-Michel Marin, Pierre Pudlo, Robin Ryder
    Subjects: Computation
    Abstract

    Also known as likelihood-free methods, approximate Bayesian computational
    (ABC) methods have appeared in the past ten years as the most satisfactory
    approach to untractable likelihood problems, first in genetics then in a
    broader spectrum of applications. However, these methods suffer to some degree
    from calibration difficulties that make them rather volatile in their
    implementation and thus render them suspicious to the users of more traditional
    Monte Carlo methods.

  9. Adaptive Multiple Importance Sampling.

    Authors: Christian P. Robert, Jean-Michel Marin, Antonietta Mira, Jean-Marie Cornuet
    Subjects: Computation
    Abstract

    The Adaptive Multiple Importance Sampling (AMIS) algorithm is aimed at an
    optimal recycling of past simulations in an iterated importance sampling
    scheme. The difference with earlier adaptive importance sampling
    implementations like Population Monte Carlo is that the importance weights of
    all simulated values, past as well as present, are recomputed at each
    iteration, following the technique of the deterministic multiple mixture
    estimator of Owen and Zhou (2000).

  10. Discussions on "Riemann manifold Langevin and Hamiltonian Monte Carlo methods".

    Authors: Arnaud Doucet, Christian P. Robert, Nicolas Chopin, Jean-Michel Marin, Pierre Jacob, Simon Barthelme, Magali Beffy, Adam M. Johansen
    Subjects: Computation
    Abstract

    This is a collection of discussions of `Riemann manifold Langevin and
    Hamiltonian Monte Carlo methods" by Girolami and Calderhead, to appear in the
    Journal of the Royal Statistical Society, Series B.

  11. Exact Bayesian Analysis of Mixtures.

    Authors: Christian P. Robert, Kerrie L. Mengersen
    Subjects: Computation
    Abstract

    In this paper, we show how a complete and exact Bayesian analysis of a
    parametric mixture model is possible in some cases when components of the
    mixture are taken from exponential families and when conjugate priors are used.
    This restricted set-up allows us to show the relevance of the Bayesian approach
    as well as to exhibit the limitations of a complete analysis, namely that it is
    impossible to conduct this analysis when the sample size is too large, when the
    data are not from an exponential family, or when priors that are more complex
    than conjugate priors are used.

  12. Using parallel computation to improve Independent Metropolis--Hastings based estimation.

    Authors: Christian P. Robert, Pierre Jacob, Murray H. Smith
    Subjects: Computation
    Abstract

    In this paper, we consider the implications of the fact that parallel
    raw-power can be exploited by a generic Metropolis--Hastings algorithm if the
    proposed values are independent. In particular, we present improvements to the
    independent Metropolis--Hastings algorithm that significantly decrease the
    variance of any estimator derived from the MCMC output, for a null computing
    cost since those improvements are based on a fixed number of target density
    evaluations.

  13. Regularization in regression: comparing Bayesian and frequentist methods in a poorly informative situation.

    Authors: Christian P. Robert, Jean-Michel Marin, Gilles Celeux, Mohammed El Anbari
    Subjects: Methodology
    Abstract

    We propose a global noninformative approach for Bayesian variable selection
    that builds on Zellner's g-priors and is similar to Liang et al. (2008). Our
    proposal does not require any kind of calibration. In the case of a benchmark,
    we compare Bayesian and frequentist regularization approaches under a low
    informative constraint when the number of variables is almost equal to the
    number of observations. The simulated and real dataset experiments we present
    here highlight the appeal of Bayesian regularization methods, when compared
    with alternatives.

  14. About incoherent inference.

    Authors: Christian P. Robert
    Subjects: Methodology
    Abstract

    In Templeton (2010), the Approximate Bayesian Computation (ABC) algorithm
    (see, e.g., Pritchard et al., 1999, Beaumont et al., 2002, Marjoram et al.,
    2003, Ratmann et al., 2009) is criticised on mathematical and logical grounds:
    "the [Bayesian] inference is mathematically incorrect and formally illogical".
    Since those criticisms turn out to be bearing on Bayesian foundations rather
    than on the computational methodology they are primarily directed at, we
    endeavour to point out in this note the statistical errors and inconsistencies
    in Templeton (2010), refering to Beaumont et al.

  15. On Particle Learning.

    Authors: Christian P. Robert, Nicolas Chopin, Jean-Michel Marin, Alessandra Iacobucci, Kerrie Mengersen, Robin Ryder, Christian Schäfer
    Subjects: Methodology
    Abstract

    This document is the aggregation of several discussions of Lopes et al.
    (2010) we submitted to the proceedings of the Ninth Valencia Meeting, held in
    Benidorm, Spain, on June 3-8, 2010, in conjunction with Hedibert Lopes' talk at
    this meeting. The main point in those discussions is the potential for
    degeneracy in the particle learning methodology, related with the exponential
    forgetting of the past simulations. We illustrate the resulting difficulties in
    the case of mixtures.

  16. Evidence and Evolution: A Review.

    Authors: Christian P. Robert
    Subjects: Applications
    Abstract

    "Evidence and Evolution: the Logic behind the Science" was published in 2008
    by Elliott Sober. It examines the philosophical foundations of the statistical
    arguments used to evaluate hypotheses in evolutionary biology, based on simple
    examples and likelihood ratios. The difficulty with reading the book from a
    statistician's perspective is the reluctance of the author to engage into model
    building and even less into parameter estimation.

  17. An attempt at reading Keynes'Treatise on Probability.

    Authors: Christian P. Robert
    Subjects: Statistics
    Abstract

    The book A Treatise on Probability was published by John Maynard Keynes in
    1921. It contains a critical assessment of the foundations of probability and
    of the current statistical methodology. As a modern reader, we review here the
    aspects that are most related with statistics, avoiding a neophyte's
    perspective on the philosophical issues. In particular, the book is quite
    critical of the Bayesian approach and we examine the arguments provided by
    Keynes, as well as the alternative he proposes.

  18. On computational tools for Bayesian data analysis.

    Authors: Christian P. Robert, Jean-Michel Marin
    Subjects: Computation
    Abstract

    While Robert and Rousseau (2010) addressed the foundational aspects of
    Bayesian analysis, the current chapter details its practical aspects through a
    review of the computational methods available for approximating Bayesian
    procedures. Recent innovations like Monte Carlo Markov chain, sequential Monte
    Carlo methods and more recently Approximate Bayesian Computation techniques
    have considerably increased the potential for Bayesian applications and they
    have also opened new avenues for Bayesian inference, first and foremost
    Bayesian model choice.

  19. Bayesian computational methods.

    Authors: Christian P. Robert
    Subjects: Computation
    Abstract

    In this chapter, we will first present the most standard computational
    challenges met in Bayesian Statistics, focussing primarily on mixture
    estimation and on model choice issues, and then relate these problems with
    computational solutions. Of course, this chapter is only a terse introduction
    to the problems and solutions related to Bayesian computations. For more
    complete references, see Robert and Casella (2004, 2009), or Marin and Robert
    (2007), among others.

  20. Bayesian Inference.

    Authors: Judith Rousseau, Christian P. Robert, Jean-Michel Marin
    Subjects: Methodology
    Abstract

    This chapter provides a overview of Bayesian inference, mostly emphasising
    that it is a universal method for summarising uncertainty and making estimates
    and predictions using probability statements conditional on observed data and
    an assumed model (Gelman 2008).

  21. The Search for Certainty: a critical assessment.

    Authors: Christian P. Robert
    Subjects: Statistics
    Abstract

    The book The Search for Certainty published in 2009 by Krzysztof Burdzy
    examines the "philosophical duopoly" at the foundation of statistics and find
    it missing. We point out in this review the weakness of the scholarly arguments
    presented in the book, we question the relevance of introducing a new set of
    probability axioms, and we conclude on the lack of impact of this book on
    statistical foundations and on Bayesian statistics in particular.

  22. On Bayesian Data Analysis.

    Authors: Judith Rousseau, Christian P. Robert
    Subjects: Methodology
    Abstract

    This introduction to Bayesian statistics presents the main concepts as well
    as the principal reasons advocated in favour of a Bayesian modelling. We cover
    the various approaches to prior determination as well as the basis asymptotic
    arguments in favour of using Bayes estimators. The testing aspects of Bayesian
    inference are also examined in details.

  23. Introducing Monte Carlo Methods with R Solutions to Odd-Numbered Exercises.

    Authors: George Casella, Christian P. Robert
    Subjects: Methodology
    Abstract

    This is the solution manual to the odd-numbered exercises in our book
    "Introducing Monte Carlo Methods with R", published by Springer Verlag on
    December 10, 2009, and made freely available to everyone.

  24. Harold Jeffreys's Theory of Probability Revisited.

    Authors: Judith Rousseau, Christian P. Robert, Nicolas Chopin
    Subjects: Statistics
    Abstract

    Published exactly seventy years ago, Jeffreys's Theory of Probability (1939)
    has had a unique impact on the Bayesian community and is now considered to be
    one of the main classics in Bayesian Statistics as well as the initiator of the
    objective Bayes school. In particular, its advances on the derivation of
    noninformative priors as well as on the scaling of Bayes factors have had a
    lasting impact on the field. However, the book reflects the characteristics of
    the time, especially in terms of mathematical rigor.

  25. Improving the Convergence Properties of the Data Augmentation Algorithm with an Application to Bayesian Mixture Modelling.

    Authors: Christian P. Robert, James P. Hobert, Vivekananda Roy
    Subjects: Methodology
    Abstract

    Every reversible Markov chain defines an operator whose spectrum encodes the
    convergence properties of the chain. When the state space is finite, the
    spectrum is just the set of eigenvalues of the corresponding Markov transition
    matrix. However, when the state space is infinite, the spectrum may be
    uncountable, and is nearly always impossible to calculate. In most applications
    of the data augmentation (DA) algorithm, the state space of the DA Markov chain
    is infinite.

  26. Comments on "Particle Markov chain Monte Carlo" by C. Andrieu, A. Doucet, and R. Hollenstein.

    Authors: Christian P. Robert, Nicolas Chopin, Pierre Jacob, Havard Rue
    Subjects: Computation
    Abstract

    This is the compilation of our comments submitted to the Journal of the Royal
    Statistical Society, Series B, to be published within the discussion of the
    Read Paper of Andrieu, Doucet and Hollenstein.

  27. A vanilla Rao--Blackwellisation of Metropolis-Hastings algorithms.

    Authors: Christian P. Robert, Randal Douc
    Subjects: Computation
    Abstract

    Casella and Robert (1996) presented a general Rao--Blackwellisation principle
    for accept-reject and Metropolis-Hastings schemes that leads to significant
    decreases in the variance of the resulting estimators, but at a high cost in
    computing and storage. Adopting a completely different perspective, we
    introduce instead a universal scheme that guarantees variance reductions in all
    Metropolis-Hastings based estimators while keeping the computing cost under
    control.

  28. Bayesian Core: The Complete Solution Manual.

    Authors: Christian P. Robert, Jean-Michel Marin
    Subjects: Methodology
    Abstract

    This solution manual contains the unabridged and original solutions to all
    the exercises proposed in Bayesian Core, along with R programs when necessary.

  29. Importance sampling methods for Bayesian discrimination between embedded models.

    Authors: Christian P. Robert, Jean-Michel Marin
    Subjects: Computation
    Abstract

    This paper surveys some well-established approaches on the approximation of
    Bayes factors used in Bayesian model choice, mostly as covered in Chen et al.
    (2000). Our focus here is on methods that are based on importance sampling
    strategies rather than variable dimension techniques like reversible jump MCMC,
    including: crude Monte Carlo, maximum likelihood based importance sampling,
    bridge and harmonic mean sampling, as well as Chib's method based on the
    exploitation of a functional equality.

  30. Model choice versus model criticism.

    Authors: Christian P. Robert, Kerrie L. Mengersen, Carla Chen
    Subjects: Methodology
    Abstract

    The new perspectives on ABC and Bayesian model criticisms presented in
    Ratmann et al.(2009) are challenging standard approaches to Bayesian model
    choice. We discuss here some issues arising from the authors' approach,
    including prior influence, model assessment and criticism, and the meaning of
    error in ABC.

  31. On the relevance of the Bayesian approach to Statistics.

    Authors: Christian P. Robert
    Subjects: Methodology
    Abstract

    We argue here about the relevance and the ultimate unity of the Bayesian
    approach in a non-conflicting and non-antagonistic manner. Our main theme is
    that Bayesian data analysis is an effective tool for handling complex models,
    as proven by the increasing proportion of Bayesian studies in the applied
    sciences. We disregard in this essay the philosophical debates on the deeper
    meaning of probability and on the random nature of parameters as things of the
    past that do a disservice to the approach and are incomprehensible to most
    bystanders.

  32. Harold Jeffreys' Theory of Probability revisited: a reply.

    Authors: Judith Rousseau, Christian P. Robert, Nicolas Chopin
    Subjects: Methodology
    Abstract

    We are grateful to all discussants (Bernardo, Gelman, Kass, Lindley, Senn,
    and Zellner) of our re-visitation for their strong support in our enterprise
    and for their overall agreement with our perspective. Further discussions with
    them and other leading statisticians showed that the legacy of Theory of
    Probability is alive and lasting.

  33. Harold Jeffreys' Theory of Probability revisited: a reply.

    Authors: Judith Rousseau, Christian P. Robert, Nicolas Chopin
    Subjects: Methodology
    Abstract

    We are grateful to all discussants (Bernardo, Gelman, Kass, Lindley, Senn,
    and Zellner) of our re-visitation for their strong support in our enterprise
    and for their overall agreement with our perspective. Further discussions with
    them and other leading statisticians showed that the legacy of Theory of
    Probability is alive and lasting.

  34. Monte Carlo Methods in Statistics.

    Authors: Christian P. Robert
    Subjects: Computation
    Abstract

    Monte Carlo methods are now an essential part of the statistician's toolbox,
    to the point of being more familiar to graduate students than the measure
    theoretic notions upon which they are based! We recall in this note some of the
    advances made in the design of Monte Carlo techniques towards their use in
    Statistics, referring to Robert and Casella (2004,2010) for an in-depth
    coverage.

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