We show that solutions of Thurston equation on triangulated 3-manifolds in a
commutative ring carry topological information. We also introduce a homogeneous
Thurston equation and a commutative ring associated to triangulated
3-manifolds.
A family of coordinates $\psi_h$ for the Teichm\"uller space of a compact
surface with boundary was introduced in \cite{l2}. In the work \cite{m1},
Mondello showed that the coordinate $\psi_0$ can be used to produce a natural
cell decomposition of the Teichm\"uller space invariant under the action of the
mapping class group. In this paper, we show that the similar result also works
for all other coordinate $\psi_h$ for any $h \geq 0$.
The Gene Ontology (GO) provides a knowledge base to effectively describe
proteins. However, measuring similarity between proteins based on GO remains a
challenge. In this paper, we propose a new similarity measure, information
coefficient similarity measure (SimIC), to effectively integrate both the
information content (IC) of GO terms and the structural information of GO
hierarchy to determine the similarity between proteins.
Any constructive continuous function must have a gradually varied
approximation in compact space. However, the refinement of domain for
$\sigma-$-net might be very small. Keeping the original discretization (square
or triangulation), can we get some interesting properties related to gradual
variation? In this note, we try to prove that many harmonic functions are
gradually varied or near gradually varied; this means that the value of the
center point differs from that of its neighbor at most by 2.
We consider a volume maximization program to construct hyperbolic structures
on triangulated 3-manifolds, for which previous progress has lead to consider
angle assignments which do not correspond to a hyperbolic metric on each
simplex. We show that critical points of the generalized volume are associated
to geometric structures modeled on the extended hyperbolic space -- the natural
extension of hyperbolic space by the de Sitter space -- except for the
degenerate case where all simplices are Euclidean in a generalized sense.